Ruto named the entities Thursday during the first anniversary of the e-Citizen directorate even as he sounded a warning to the heads of such institutions.
"They have one week to comply. Otherwise, they know what to do, they can make use of the door,” he warned.
According to Ruto, the decision to migrate the service will ensure that the Treasury follows up on revenues collected by the government.
The head of state also criticised some agencies which he said bypassed the e-Citizen platform and used alternative payment methods that undermined accountability.
"I want a record of the last three months of government agencies that are already on the e-citizen platforms but have decided to use alternative means with grey spaces so that we can take action against the people who are undermining transparency in the collection of public resources."
The Independent Police Oversight Authority (IPOA), National Defence University, Energy and Petroleum Regulation Authority (EPRA) and the Kenya Power Company Ltd are the other entities.
Here is the full list;
National Cancer Institute of Kenya
Kenya Hospital Authority Trust Fund
Kenya Nutritionists and Dietitians Institute
Health Records and Managers Board
National Syndemic Disease Control Council
Occupational Therapy Council of Kenya
Digital Health Authority
Kenya Biovax Institute Ltd
Kenya National Public Health Institute
Kenya Human Health Resource Authority
Kenya Water Institute
Tanathi Water Works Development Agency
Water Sector Trust Fund
Kenya Engineering Technology Registration Board
Private Security Regulatory Authority
Nairobi International Financial Center
Kenya Reinsurance Corporation
Financial Reporting Center
Kenya Institute of Supplies Management
Consolidated Bank of Kenya
Development Bank of Kenya
Kenya Accountants and Secretaries National Examination Board
Institute of Certified Public Accountants of Kenya
Institute of Certified Secretaries
Rural Electrification and Renewable Energy Corporation
Geothermal Development Corporation
Kenya Petroleum and Refineries Ltd
Kenya Space Agency
Kenya Shipyards Ltd